# HG changeset patch
# User yating-l
# Date 1489516989 14400
# Node ID 0e29c929a8ee74b4b0c347854b723dc799b5233d
# Parent  445043f2d9b1db011aab2abcc4b99147c4a05853
planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty

diff -r 445043f2d9b1 -r 0e29c929a8ee jbrowse_hub.xml
--- a/jbrowse_hub.xml	Tue Mar 14 14:34:45 2017 -0400
+++ b/jbrowse_hub.xml	Tue Mar 14 14:43:09 2017 -0400
@@ -149,7 +149,7 @@
             <repeat name="format">
                 <conditional name="formatChoice">
                     <param name="format_select" value="gff3"/>
-                    <param name="GFF3" value="dbia3/raw/Augustus_on_data_3__GTF_GFF.gff3" />
+                    <param name="GFF3-transcript" value="dbia3/raw/Augustus_on_data_3__GTF_GFF.gff3" />
                 </conditional>
             </repeat>
             <output name="output" file="hubtest" >
diff -r 445043f2d9b1 -r 0e29c929a8ee tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Mar 14 14:34:45 2017 -0400
+++ b/tool_dependencies.xml	Tue Mar 14 14:43:09 2017 -0400
@@ -72,7 +72,6 @@
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/bin</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/src</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/extlib</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/jbrowse/plugins</environment_variable>
                 </action>
             </actions_group>
          </install>