diff TrackHub.py @ 15:8627394693c6 draft

planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty

--- a/TrackHub.py	Tue Mar 14 14:43:09 2017 -0400
+++ b/TrackHub.py	Tue Mar 14 14:57:39 2017 -0400
@@ -97,6 +97,8 @@
         shutil.make_archive(self.out_path, 'zip', self.out_path)  
         shutil.rmtree(self.out_path) 
     
+    #TODO: this will list all zip files in the filedir and sub-dirs. worked in Galaxy but all list zip files in test-data when
+    #run it locally. May need modify
     def outHtml(self):
         #htmloutput = tempfile.NamedTemporaryFile(self.outfile, suffix = '.html', bufsize=0, delete=False)
         with open(self.outfile, 'w') as htmlfile:
@@ -111,6 +113,7 @@
                         relative_directory = os.path.relpath(root, filedir)
                         relative_file_path = os.path.join(relative_directory, file)
                         htmlstr += zipfiles % relative_file_path
+                        
             #htmlstr = htmlstr % zipfile
             htmlfile.write(htmlstr)