comparison TrackHub.py @ 15:8627394693c6 draft

planemo upload for repository https://github.com/Yating-L/jbrowse_hub commit f18ea51d27ec7addfa6413716391cfefebc8acbc-dirty

14:0e29c929a8ee

    def makeArchive(self):
        shutil.make_archive(self.out_path, 'zip', self.out_path)  
        shutil.rmtree(self.out_path) 
    
    def outHtml(self):
        #htmloutput = tempfile.NamedTemporaryFile(self.outfile, suffix = '.html', bufsize=0, delete=False)
        with open(self.outfile, 'w') as htmlfile:
            htmlstr = 'The JBrowse Hub is created: <br>'
            zipfiles = '<li><a href = "%s">Download</a></li>'

                for file in files:
                    if file.endswith('.zip'):   
                        relative_directory = os.path.relpath(root, filedir)
                        relative_file_path = os.path.join(relative_directory, file)
                        htmlstr += zipfiles % relative_file_path
            #htmlstr = htmlstr % zipfile
            htmlfile.write(htmlstr)

   

15:8627394693c6

    def makeArchive(self):
        shutil.make_archive(self.out_path, 'zip', self.out_path)  
        shutil.rmtree(self.out_path) 
    
    #TODO: this will list all zip files in the filedir and sub-dirs. worked in Galaxy but all list zip files in test-data when
    #run it locally. May need modify
    def outHtml(self):
        #htmloutput = tempfile.NamedTemporaryFile(self.outfile, suffix = '.html', bufsize=0, delete=False)
        with open(self.outfile, 'w') as htmlfile:
            htmlstr = 'The JBrowse Hub is created: <br>'
            zipfiles = '<li><a href = "%s">Download</a></li>'

                for file in files:
                    if file.endswith('.zip'):   
                        relative_directory = os.path.relpath(root, filedir)
                        relative_file_path = os.path.join(relative_directory, file)
                        htmlstr += zipfiles % relative_file_path
                        
            #htmlstr = htmlstr % zipfile
            htmlfile.write(htmlstr)