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view tool_dependencies.xml @ 71:b724e559907e draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 92e6dc28cbc0253b964b2cf594320042d8cd9524-dirty
author yating-l
date Wed, 27 Sep 2017 11:15:44 -0400
parents 4ca7cbf2d9b8
children 9f875c8bbb26
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<?xml version="1.0"?>
<tool_dependency>
    <!-- Useful for HAC are:
        - twoBitInfo
        - sort
        - bedToBigBed
        - gff3ToGenePred
        - gtfToGenePred
        - genePredToBed
        - genePredToBigGenePred
        - faToTwoBit
        - samtools
        - pslToBigPsl
    -->
    <package name="samtools" version="1.2">
        <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="ucsc_hac" version="340">
        <repository changeset_revision="4779f4d34db6" name="package_ucsc_hac_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="ucsc_bigbed" version="340">
        <repository changeset_revision="0a19f1cdbe8d" name="package_ucsc_bigbed_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

    <package name="ucsc_bigwig" version="340">      
        <repository changeset_revision="60be8cdcf7ef" name="package_ucsc_bigwig_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

</tool_dependency>