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view tool_dependencies.xml @ 74:9f875c8bbb26 draft

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author yating-l
date Wed, 27 Sep 2017 16:07:52 -0400
parents 4ca7cbf2d9b8
children b4e0da6f42ea
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<?xml version="1.0"?>
<tool_dependency>
    <!-- Useful for HAC are:
        - twoBitInfo
        - sort
        - bedToBigBed
        - gff3ToGenePred
        - gtfToGenePred
        - genePredToBed
        - genePredToBigGenePred
        - faToTwoBit
        - samtools
        - pslToBigPsl
    -->
    <package name="samtools" version="1.2">
        <repository changeset_revision="5b7172f9b230" name="package_samtools_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="ucsc_hac" version="340.2">
        <repository changeset_revision="1d89e25fad11" name="package_ucsc_hac_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="ucsc_bigbed" version="340">
        <repository changeset_revision="0a19f1cdbe8d" name="package_ucsc_bigbed_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

    <package name="ucsc_bigwig" version="340">      
        <repository changeset_revision="60be8cdcf7ef" name="package_ucsc_bigwig_340" owner="yating-l" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

</tool_dependency>