Mercurial > repos > yating-l > hubarchivecreator

annotate templates/trackDb/layout.txt @ 62:4c4e8941feda draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
author yating-l
date Mon, 10 Jul 2017 17:06:11 -0400
parents 583431485006
children 9d8d6b976fc2
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
3e0c61b52a06 planemo upload for repository https://github.com/Yating-L/hub-archive-creator commit a77635b40ebd29baafb3bea57f8cbfb3f252e3b0-dirty
yating-l
parents:
diff changeset
1 % for trackDb in trackDbs:
52
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
2 % if "bigWig" in trackDb.trackType:
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
3
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
4 track ${trackDb.trackName}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
5 longLabel ${trackDb.longLabel}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
6 shortLabel ${trackDb.shortLabel}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
7 bigDataUrl ${trackDb.trackDataURL}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
8 visibility ${trackDb.visibility}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
9 priority ${trackDb.priority}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
10 color ${trackDb.track_color}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
11 group ${trackDb.group_name.lower().replace(' ', '_')}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
12 type ${trackDb.trackType}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
13 autoScale on
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
14 maxHeightPixels 100:32:8
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
15 windowingFunction mean+whiskers
0
3e0c61b52a06 planemo upload for repository https://github.com/Yating-L/hub-archive-creator commit a77635b40ebd29baafb3bea57f8cbfb3f252e3b0-dirty
yating-l
parents:
diff changeset
16
57
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
17 % elif "bigBed 12 +" in trackDb.trackType and trackDb.database:
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
18
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
19 track ${trackDb.trackName}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
20 longLabel ${trackDb.longLabel}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
21 shortLabel ${trackDb.shortLabel}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
22 bigDataUrl ${trackDb.trackDataURL}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
23 type ${trackDb.trackType}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
24 visibility ${trackDb.visibility}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
25 thickDrawItem ${trackDb.thickDrawItem}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
26 priority ${trackDb.priority}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
27 color ${trackDb.track_color}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
28 group ${trackDb.group_name.lower().replace(' ', '_')}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
29 searchIndex name
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
30 % if "NCBI" in trackDb.database:
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
31 url https://www.ncbi.nlm.nih.gov/protein/$$
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
32 urlLabel ${trackDb.database} Details:
62
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
33 iframeUrl https://www.ncbi.nlm.nih.gov/protein/$$
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
34 iframeOptions height='600' width='800'
60
583431485006 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit acefc0713163be931deb145a658c2fff18692935
yating-l
parents: 59
diff changeset
35 % elif "UniProt" in trackDb.database:
57
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
36 url http://www.uniprot.org/uniprot/$$
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
37 urlLabel ${trackDb.database} Details:
62
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
38 iframeUrl http://www.uniprot.org/uniprot/$$
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
39 iframeOptions height='600' width='800'
57
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
40 % elif "FlyBase" in trackDb.database:
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
41 url http://flybase.org/reports/$$
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
42 urlLabel ${trackDb.database} Details:
62
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
43 iframeUrl http://flybase.org/reports/$$
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
44 iframeOptions height='600' width='800'
57
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
45 % else:
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
46 url https://www.ncbi.nlm.nih.gov/gquery/?term=$$
59
f311e21ef362 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697-dirty
yating-l
parents: 58
diff changeset
47 urlLabel NCBI Details:
62
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
48 iframeUrl https://www.ncbi.nlm.nih.gov/gquery/?term=$$
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
49 iframeOptions height='600' width='800'
57
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
50 % endif
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
51
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
52 % elif "bigPsl" in trackDb.trackType and trackDb.database:
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
53
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
54 track ${trackDb.trackName}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
55 longLabel ${trackDb.longLabel}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
56 shortLabel ${trackDb.shortLabel}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
57 bigDataUrl ${trackDb.trackDataURL}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
58 type ${trackDb.trackType}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
59 visibility ${trackDb.visibility}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
60 thickDrawItem ${trackDb.thickDrawItem}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
61 priority ${trackDb.priority}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
62 color ${trackDb.track_color}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
63 group ${trackDb.group_name.lower().replace(' ', '_')}
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
64 searchIndex name
59
f311e21ef362 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697-dirty
yating-l
parents: 58
diff changeset
65 % if "NCBI" in trackDb.database:
57
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
66 url https://www.ncbi.nlm.nih.gov/nuccore/$$
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
67 urlLabel NCBI Details:
62
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
68 iframeUrl https://www.ncbi.nlm.nih.gov/nuccore/$$
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
69 iframeOptions height='600' width='800'
59
f311e21ef362 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697-dirty
yating-l
parents: 58
diff changeset
70 % else:
f311e21ef362 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697-dirty
yating-l
parents: 58
diff changeset
71 url https://www.ncbi.nlm.nih.gov/gquery/?term=$$
f311e21ef362 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697-dirty
yating-l
parents: 58
diff changeset
72 urlLabel NCBI Details:
62
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
73 iframeUrl https://www.ncbi.nlm.nih.gov/gquery/?term=$$
4c4e8941feda planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 5bbecd016ad3a784ad030cb82a09a3ac40dc6060-dirty
yating-l
parents: 60
diff changeset
74 iframeOptions height='600' width='800'
59
f311e21ef362 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697-dirty
yating-l
parents: 58
diff changeset
75 % endif
57
b39dd0b5a166 planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit ce28781f52a4f84039de300cb41e3982f2e8bf51-dirty
yating-l
parents: 52
diff changeset
76
52
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
77 % else:
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
78
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
79 ## See this http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
80 track ${trackDb.trackName}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
81 longLabel ${trackDb.longLabel}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
82 shortLabel ${trackDb.shortLabel}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
83 bigDataUrl ${trackDb.trackDataURL}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
84 type ${trackDb.trackType}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
85 visibility ${trackDb.visibility}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
86 thickDrawItem ${trackDb.thickDrawItem}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
87 priority ${trackDb.priority}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
88 color ${trackDb.track_color}
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
89 group ${trackDb.group_name.lower().replace(' ', '_')}
58
a0fc8379223c planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697
yating-l
parents: 57
diff changeset
90 searchIndex name
52
c66803bff0cc planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit adc1ac50269e02570e7ce12c732637bdd3f9a547-dirty
yating-l
parents: 0
diff changeset
91 % endif
0
3e0c61b52a06 planemo upload for repository https://github.com/Yating-L/hub-archive-creator commit a77635b40ebd29baafb3bea57f8cbfb3f252e3b0-dirty
yating-l
parents:
diff changeset
92 % endfor