Mercurial > repos > yating-l > hubarchivecreator

annotate templates/trackDb/layout.txt @ 59:f311e21ef362 draft

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planemo upload for repository https://github.com/goeckslab/hub-archive-creator commit 72268f816f10341dbe3f6b33f8d9170d859c9697-dirty
author yating-l
date Fri, 30 Jun 2017 15:50:57 -0400
parents a0fc8379223c
children 583431485006
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3e0c61b52a06 planemo upload for repository https://github.com/Yating-L/hub-archive-creator commit a77635b40ebd29baafb3bea57f8cbfb3f252e3b0-dirty
yating-l
parents:
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1 % for trackDb in trackDbs:
52
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yating-l
parents: 0
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2 % if "bigWig" in trackDb.trackType:
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yating-l
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4 track ${trackDb.trackName}
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yating-l
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5 longLabel ${trackDb.longLabel}
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yating-l
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6 shortLabel ${trackDb.shortLabel}
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yating-l
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7 bigDataUrl ${trackDb.trackDataURL}
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yating-l
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8 visibility ${trackDb.visibility}
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yating-l
parents: 0
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9 priority ${trackDb.priority}
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yating-l
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10 color ${trackDb.track_color}
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11 group ${trackDb.group_name.lower().replace(' ', '_')}
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yating-l
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12 type ${trackDb.trackType}
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13 autoScale on
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14 maxHeightPixels 100:32:8
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15 windowingFunction mean+whiskers
0
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16
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17 % elif "bigBed 12 +" in trackDb.trackType and trackDb.database:
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18
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19 track ${trackDb.trackName}
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20 longLabel ${trackDb.longLabel}
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21 shortLabel ${trackDb.shortLabel}
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22 bigDataUrl ${trackDb.trackDataURL}
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23 type ${trackDb.trackType}
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24 visibility ${trackDb.visibility}
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25 thickDrawItem ${trackDb.thickDrawItem}
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26 priority ${trackDb.priority}
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27 color ${trackDb.track_color}
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28 group ${trackDb.group_name.lower().replace(' ', '_')}
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29 searchIndex name
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30 % if "NCBI" in trackDb.database:
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31 url https://www.ncbi.nlm.nih.gov/protein/$$
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32 urlLabel ${trackDb.database} Details:
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33 % elif "Swiss-Prot" in trackDb.database:
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34 url http://www.uniprot.org/uniprot/$$
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35 urlLabel ${trackDb.database} Details:
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36 % elif "FlyBase" in trackDb.database:
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37 url http://flybase.org/reports/$$
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38 urlLabel ${trackDb.database} Details:
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39 % else:
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40 url https://www.ncbi.nlm.nih.gov/gquery/?term=$$
59
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41 urlLabel NCBI Details:
57
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42 % endif
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43
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44 % elif "bigPsl" in trackDb.trackType and trackDb.database:
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45
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46 track ${trackDb.trackName}
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47 longLabel ${trackDb.longLabel}
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48 shortLabel ${trackDb.shortLabel}
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49 bigDataUrl ${trackDb.trackDataURL}
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50 type ${trackDb.trackType}
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51 visibility ${trackDb.visibility}
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52 thickDrawItem ${trackDb.thickDrawItem}
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53 priority ${trackDb.priority}
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54 color ${trackDb.track_color}
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55 group ${trackDb.group_name.lower().replace(' ', '_')}
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56 searchIndex name
59
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57 % if "NCBI" in trackDb.database:
57
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58 url https://www.ncbi.nlm.nih.gov/nuccore/$$
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59 urlLabel NCBI Details:
59
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60 % else:
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61 url https://www.ncbi.nlm.nih.gov/gquery/?term=$$
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62 urlLabel NCBI Details:
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63 % endif
57
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64
52
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65 % else:
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66
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67 ## See this http://genome.ucsc.edu/goldenPath/help/hgTrackHubHelp.html
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68 track ${trackDb.trackName}
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69 longLabel ${trackDb.longLabel}
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70 shortLabel ${trackDb.shortLabel}
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71 bigDataUrl ${trackDb.trackDataURL}
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72 type ${trackDb.trackType}
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73 visibility ${trackDb.visibility}
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74 thickDrawItem ${trackDb.thickDrawItem}
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75 priority ${trackDb.priority}
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76 color ${trackDb.track_color}
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77 group ${trackDb.group_name.lower().replace(' ', '_')}
58
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78 searchIndex name
52
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79 % endif
0
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80 % endfor