comparison data_manager/fetch_reference_data.py @ 6:2eb398f3649c draft

planemo upload

5:2f926e7d623d

    with tarfile.open(filepath, mode='r:*') as tar:
        subdir = [
          tarinfo for tarinfo in tar.getmembers()
          if sequence_id in tarinfo.name
        ]
        tar.extractall(members=subdir)
    GlimmerHMM_TRAINED_DIR = os.path.join(downloadpath, 'GlimmerHMM', 'trained_dir', sequence_id)
    glimmerhmm_trained_target_dir = os.path.join(target_directory, sequence_id)
    shutil.copytree(GlimmerHMM_TRAINED_DIR, glimmerhmm_trained_target_dir)
    data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir)
    _add_data_table_entry(data_manager_dict, data_table_entry)
    
    cleanup_before_exit('tmp')

6:2eb398f3649c

    with tarfile.open(filepath, mode='r:*') as tar:
        subdir = [
          tarinfo for tarinfo in tar.getmembers()
          if sequence_id in tarinfo.name
        ]
        tar.extractall(path=downloadpath, members=subdir)
    glimmerhmm_trained_dir = os.path.join(downloadpath, 'GlimmerHMM', 'trained_dir', sequence_id)
    glimmerhmm_trained_target_dir = os.path.join(target_directory, sequence_id)
    shutil.copytree(glimmerhmm_trained_dir, glimmerhmm_trained_target_dir)
    data_table_entry = dict(value=sequence_id, name=sequence_name, path=glimmerhmm_trained_target_dir)
    _add_data_table_entry(data_manager_dict, data_table_entry)
    
    cleanup_before_exit('tmp')