changeset 23:530ccdd4cb8c draft

planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 3e8c1c54d5e12fdbc4f6c5cdae88b6d054db7c45-dirty
author ximgchess
date Wed, 12 Apr 2023 11:28:49 +0000
parents 73297b1c561e
children 0fc368bffc0f
files tomo/.tomo_reduce.xml.swp tomo/tomo_reduce.xml
diffstat 2 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
Binary file tomo/.tomo_reduce.xml.swp has changed
--- a/tomo/tomo_reduce.xml	Wed Apr 12 11:25:54 2023 +0000
+++ b/tomo/tomo_reduce.xml	Wed Apr 12 11:28:49 2023 +0000
@@ -7,18 +7,18 @@
     <command detect_errors="exit_code">
         <![CDATA[
         #if str($map.type_selector) == "yaml"
-            cp '$input_file' map.yaml &&
-            cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml
+            cp $input_file map.yaml &&
+            cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml &&
         #else
-            cp '$input_file' setup.nex &&
-            cp '$tool_config' reduce.yaml
+            cp $input_file setup.nex &&
+            cp $tool_config reduce.yaml &&
         #end if
         cat reduce.yaml
         ]]>
     </command>
     <configfiles>
         <configfile name="tool_config">
-            <![CDATA[
+            <![CDATA[#slurp
 #echo 'img_x_bounds:' #
 #if str($img_x_bounds.type_selector) == "full_range"
 #echo '- -1' #