# HG changeset patch
# User ximgchess
# Date 1681298929 0
# Node ID 530ccdd4cb8c12a59e4a1b4e888a6972562b5b4d
# Parent  73297b1c561e58b1ece14d1f0b5912396aaa2831
planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 3e8c1c54d5e12fdbc4f6c5cdae88b6d054db7c45-dirty

diff -r 73297b1c561e -r 530ccdd4cb8c tomo/.tomo_reduce.xml.swp
Binary file tomo/.tomo_reduce.xml.swp has changed
diff -r 73297b1c561e -r 530ccdd4cb8c tomo/tomo_reduce.xml
--- a/tomo/tomo_reduce.xml	Wed Apr 12 11:25:54 2023 +0000
+++ b/tomo/tomo_reduce.xml	Wed Apr 12 11:28:49 2023 +0000
@@ -7,18 +7,18 @@
     <command detect_errors="exit_code">
         <![CDATA[
         #if str($map.type_selector) == "yaml"
-            cp '$input_file' map.yaml &&
-            cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml
+            cp $input_file map.yaml &&
+            cat $__tool_directory__/andor2.yaml $tool_config > reduce.yaml &&
         #else
-            cp '$input_file' setup.nex &&
-            cp '$tool_config' reduce.yaml
+            cp $input_file setup.nex &&
+            cp $tool_config reduce.yaml &&
         #end if
         cat reduce.yaml
         ]]>
     </command>
     <configfiles>
         <configfile name="tool_config">
-            <![CDATA[
+            <![CDATA[#slurp
 #echo 'img_x_bounds:' #
 #if str($img_x_bounds.type_selector) == "full_range"
 #echo '- -1' #