Mercurial > repos > ximgchess > chap_test_20230411

annotate tomo/pipeline_find_center.yaml @ 102:f71e55577c95 draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7-dirty
author ximgchess
date Wed, 24 May 2023 17:03:19 +0000
parents e7fd2e5b53ba
children b67b9979ff74
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3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
1 pipeline:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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3 # Find rotation axis centers for the tomography stacks
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f71e55577c95 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7-dirty
ximgchess
parents: 100
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4 - common.MultipleReader:
f71e55577c95 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7-dirty
ximgchess
parents: 100
diff changeset
5 readers:
f71e55577c95 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7-dirty
ximgchess
parents: 100
diff changeset
6 - NexusReader:
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dedb67bd8d6e planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 919e80fa3f8a9160766ff4d2c6b8956ec5553ad3-dirty
ximgchess
parents: 66
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7 filename: reduced.nex
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f71e55577c95 planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit b682c580a95bebc59bc33128973cee4eac8362c7-dirty
ximgchess
parents: 100
diff changeset
8 - YAMLReader:
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3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
9 filename: find_center.yaml
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
10 schema: TomoFindCenterConfig
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
11 - tomo.TomoDataProcessor:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
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12 output_folder: tomo_find_center_plots
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
13 save_figs: 'only'
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
14 - common.YAMLWriter:
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
15 filename: output.yaml
3b1dbe3fb91b planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
ximgchess
parents:
diff changeset
16 force_overwrite: true