Mercurial > repos > ximgchess > chap_test_20230411

diff tomo/pipeline_find_center.yaml @ 66:3b1dbe3fb91b draft

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planemo upload for repository https://github.com/CHESSComputing/ChessAnalysisPipeline commit 922ced93dce7a89190712f1ad9abad569fe52683
author ximgchess
date Mon, 24 Apr 2023 16:39:59 +0000
parents
children dedb67bd8d6e
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tomo/pipeline_find_center.yaml	Mon Apr 24 16:39:59 2023 +0000
@@ -0,0 +1,16 @@
+pipeline:
+
+  # Find rotation axis centers for the tomography stacks
+  - common.MultipleReader:
+      readers:
+        - NexusReader:
+            filename: reduced.nxs
+        - YAMLReader:
+            filename: find_center.yaml
+            schema: TomoFindCenterConfig
+  - tomo.TomoDataProcessor:
+      output_folder: tomo_find_center_plots
+      save_figs: 'only'
+  - common.YAMLWriter:
+      filename: output.yaml
+      force_overwrite: true