Mercurial > repos > trinity_ctat > ctat_lncrna_data_manager

changeset 12:7a1a78b8079b draft

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Uploaded
author trinity_ctat
date Thu, 21 Jun 2018 13:40:54 -0400
parents 6dc7ef1d304b
children 1456dba605b8
files data_manager/add_ctat_lncrna_annotations.py
diffstat 1 files changed, 12 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/add_ctat_lncrna_annotations.py	Thu Jun 21 13:05:03 2018 -0400
+++ b/data_manager/add_ctat_lncrna_annotations.py	Thu Jun 21 13:40:54 2018 -0400
@@ -251,18 +251,20 @@
     annotations_file_path_hg38 = annotations_directory+"/hg38"
 
     # Set the display_name
-    if (args.display_name is None) or (args.display_name == ""):
+    # if (args.display_name is None) or (args.display_name == ""):
         # Use the root_annotations_dirname.
-        if (root_annotations_dirname != None) and (root_annotations_dirname != ""):
-            display_name_hg19 = "hg19"
-            display_name_hg38 = "hg38"
-            display_name_mm10 = "mm10"
-            display_name_mm9 = "mm9"
-        else:
-            display_name = _CTAT_lncrna_DisplayNamePrefix + _CTAT_lncrnaDir_Name
-            print "WARNING: Did not set the display name. Using the default: {:s}".format(display_name_value)
+        # print "display_name_ok$$$$$$$"
+    if (root_annotations_dirname != None) and (root_annotations_dirname != ""):
+        print "root_annotations_ok%%%%"
+        display_name_hg19 = "hg19"
+        display_name_hg38 = "hg38"
+        display_name_mm10 = "mm10"
+        display_name_mm9 = "mm9"
     else:
-        display_name = _CTAT_lncrna_DisplayNamePrefix + args.display_name
+        display_name = _CTAT_lncrna_DisplayNamePrefix + _CTAT_lncrnaDir_Name
+        print "WARNING: Did not set the display name. Using the default: {:s}".format(display_name_value)
+    #else:
+    #    display_name = _CTAT_lncrna_DisplayNamePrefix + args.display_name
     # display_name = display_name.replace(" ","_")
 
     # Set the unique_id