Mercurial > repos > trinity_ctat > ctat_lncrna_data_manager

changeset 11:6dc7ef1d304b draft

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Uploaded
author trinity_ctat
date Thu, 21 Jun 2018 13:05:03 -0400
parents f90f62998d96
children 7a1a78b8079b
files data_manager/add_ctat_lncrna_annotations.py
diffstat 1 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/data_manager/add_ctat_lncrna_annotations.py	Thu Jun 21 12:52:02 2018 -0400
+++ b/data_manager/add_ctat_lncrna_annotations.py	Thu Jun 21 13:05:03 2018 -0400
@@ -208,16 +208,16 @@
     args = parser.parse_args()
 
     # print "Arguments are parsed."
-    print "\ndownload_location is {:s}".format(str(args.download_location))
+    print "\ndownload_location is {:s}".format(str(_CTAT_lncrnaDownload_URL))
     print "display_name is {:s}".format(str(args.display_name))
     print "destination_path is {:s}\n".format(str(args.destination_path))
     root_annotations_dirname = None
     # FIX - Prob don't need annotations_was_downloaded. Not doing anything with it.
     # But it indicates success downloading the annotations, so maybe should be checking it.
     annotations_was_downloaded = False
-    if (args.download_location != ""):
+    if (_CTAT_lncrnaDownload_URL != ""):
         annotations_directory, root_annotations_dirname, annotations_was_downloaded = \
-            download_annotations(src_location=args.download_location, \
+            download_annotations(src_location=_CTAT_lncrnaDownload_URL, \
                            destination=args.destination_path, \
                            force_download=args.force_download)
     else: