Mercurial > repos > trinity_ctat > ctat_genome_ref_lib_data_manager_test2
changeset 14:3bb91cebec5c draft
Uploaded
| author | trinity_ctat |
|---|---|
| date | Fri, 15 Dec 2017 15:53:28 -0500 |
| parents | abdf6aad584a |
| children | 367b0d693b0c |
| files | data_manager/add_ctat_ref_lib.py data_manager/add_ctat_ref_lib.xml data_manager_conf.xml |
| diffstat | 1 files changed, 4 insertions(+), 2 deletions(-) [+] |
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--- a/data_manager/add_ctat_ref_lib.py Tue Dec 12 15:47:25 2017 -0500 +++ b/data_manager/add_ctat_ref_lib.py Fri Dec 15 15:53:28 2017 -0500 @@ -78,11 +78,13 @@ genome_name = "GRCh38_gencode_v26" else: genome_name = args.genome_name - + # Set the value to the basename of the directory path minus the extension. + # FIX - Need to make sure is unique. This is not good way to do it. Just doing it this way now for testing. + table_entry_value = os.path.basename(ctat_genome_resource_lib_path).split(".")[0] data_manager_dict = {} data_manager_dict['data_tables'] = {} data_manager_dict['data_tables']['ctat_genome_ref_libs'] = [] - data_table_entry = dict(value="CTAT_RESOURCE_LIB", name=genome_name, path=ctat_genome_resource_lib_path) + data_table_entry = dict(value=table_entry_value, name=genome_name, path=ctat_genome_resource_lib_path) data_manager_dict['data_tables']['ctat_genome_ref_libs'].append(data_table_entry) # Save info to json file. This is used to transfer data from the DataManager tool, to the data manager,