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1 <?xml version="1.0"?>
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2 <data_managers>
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3 <data_manager tool_file="data_manager/add_ctat_ref_lib.xml" id="ctat_genome_ref_lib_data_manager">
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4 <data_table name="ctat_genome_ref_libs">
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5 <output>
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6 <column name="value" />
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7 <!-- value is used to uniquely identify this entry in the table.
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8 For now id is also the name of the environment variable that is used within tools to
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9 access a CTAT Resource Library.
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10 FIX - Need to get rid of that and use command line params...
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11 -->
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12 <column name="name" />
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13 <!-- name is used as the selector in the pull down lists for items in this table.
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14 -->
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15 <column name="path" />
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16 <!-- path is the absolute path of the corresponding CTAT Genome Reference Library.
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17 -->
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18 <!-- <column name="path" output_ref="out_file"> -->
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19 <!-- It is typical to move the data file, but because our tool gets the destination
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20 location from the user, we do not want to move the data from that location.
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21 The full path of the CTAT Resource library is returned in location.
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22 So no need to change the value either.
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23 -->
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24 <!-- <move type="file" relativize_symlinks="False"> -->
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25 <!--<source>${path}</source> -->
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26 <!--<target base="${GALAXY_DATA_MANAGER_DATA_PATH}">ctat_genome_lib_build_dir</target> -->
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27 <!--</move> -->
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28 <!--
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29 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/ctat_genome_lib_build_dir
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30 </value_translation>
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31 -->
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32 <!-- The location returned by the tool should already be an absolute path.
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33 <value_translation type="function">abspath</value_translation>
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34 -->
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35 <!--</column> -->
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36 </output>
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37 </data_table>
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38 </data_manager>
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39 </data_managers> |
