Mercurial > repos > trinity_ctat > analyze_differential_expression
changeset 4:08f897c2b57e draft
Adding some debugging statements.
author | trinity_ctat |
---|---|
date | Mon, 02 Oct 2017 13:53:09 -0400 |
parents | b5d906ce0f06 |
children | dab3b085f23d |
files | analyze_diff_exp_wrapper.py |
diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/analyze_diff_exp_wrapper.py Mon Oct 02 13:29:07 2017 -0400 +++ b/analyze_diff_exp_wrapper.py Mon Oct 02 13:53:09 2017 -0400 @@ -80,15 +80,15 @@ print "" Final_tar_gz= "edgeR.tar.gz" -run_command("cp "+ sys.argv[1] + " " + "Final_tar_gz") -run_command("tar -xvf " + "Final_tar_gz") +run_command("cp "+ sys.argv[1] + " " + Final_tar_gz) +run_command("tar -xzvf " + Final_tar_gz) run_command("mv " + "edgeR_results" + "/* ." ) print "" run_command("pwd") run_command("ls -lad ./*") -print "\nedgeR_results" -run_command("ls -lad edgeR_results/*") +print "\nedgeR_results/" +run_command("ls -la edgeR_results") # run the analyze command cmd= TRINITY_BASE_DIR + "/Analysis/DifferentialExpression/analyze_diff_expr.pl "+ "--matrix " + Normalized_Matrix + " -P " + Pvalue + " -C " + Cvalue