Mercurial > repos > trinity_ctat > analyze_differential_expression

changeset 4:08f897c2b57e draft

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Adding some debugging statements.
author trinity_ctat
date Mon, 02 Oct 2017 13:53:09 -0400
parents b5d906ce0f06
children dab3b085f23d
files analyze_diff_exp_wrapper.py
diffstat 1 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/analyze_diff_exp_wrapper.py	Mon Oct 02 13:29:07 2017 -0400
+++ b/analyze_diff_exp_wrapper.py	Mon Oct 02 13:53:09 2017 -0400
@@ -80,15 +80,15 @@
 
 print ""
 Final_tar_gz= "edgeR.tar.gz"
-run_command("cp "+ sys.argv[1] + " " + "Final_tar_gz")
-run_command("tar -xvf " + "Final_tar_gz")
+run_command("cp "+ sys.argv[1] + " " + Final_tar_gz)
+run_command("tar -xzvf " + Final_tar_gz)
 run_command("mv " + "edgeR_results" + "/* ." )
 
 print ""
 run_command("pwd")
 run_command("ls -lad ./*")
-print "\nedgeR_results"
-run_command("ls -lad edgeR_results/*")
+print "\nedgeR_results/"
+run_command("ls -la edgeR_results")
 
 # run the analyze command
 cmd= TRINITY_BASE_DIR + "/Analysis/DifferentialExpression/analyze_diff_expr.pl "+ "--matrix " +  Normalized_Matrix + " -P " +  Pvalue + " -C " + Cvalue