# HG changeset patch
# User trinity_ctat
# Date 1506966789 14400
# Node ID 08f897c2b57eaa5b490c4b70f749df1ec6e6cc2c
# Parent  b5d906ce0f06f696b7d08b1fd5fb40f4ab0f3605
Adding some debugging statements.

diff -r b5d906ce0f06 -r 08f897c2b57e analyze_diff_exp_wrapper.py
--- a/analyze_diff_exp_wrapper.py	Mon Oct 02 13:29:07 2017 -0400
+++ b/analyze_diff_exp_wrapper.py	Mon Oct 02 13:53:09 2017 -0400
@@ -80,15 +80,15 @@
 
 print ""
 Final_tar_gz= "edgeR.tar.gz"
-run_command("cp "+ sys.argv[1] + " " + "Final_tar_gz")
-run_command("tar -xvf " + "Final_tar_gz")
+run_command("cp "+ sys.argv[1] + " " + Final_tar_gz)
+run_command("tar -xzvf " + Final_tar_gz)
 run_command("mv " + "edgeR_results" + "/* ." )
 
 print ""
 run_command("pwd")
 run_command("ls -lad ./*")
-print "\nedgeR_results"
-run_command("ls -lad edgeR_results/*")
+print "\nedgeR_results/"
+run_command("ls -la edgeR_results")
 
 # run the analyze command
 cmd= TRINITY_BASE_DIR + "/Analysis/DifferentialExpression/analyze_diff_expr.pl "+ "--matrix " +  Normalized_Matrix + " -P " +  Pvalue + " -C " + Cvalue