Mercurial > repos > trinity_ctat > align_and_estimate_abundance
changeset 12:a130d5b5f34b draft
Added tool directory to path of trinityToolWrapper.py
author | trinity_ctat |
---|---|
date | Tue, 26 Sep 2017 23:11:20 -0400 |
parents | 2e0e45063fad |
children | 321a69419c77 |
files | align_and_estimate_abundance.xml |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/align_and_estimate_abundance.xml Tue Sep 26 22:56:18 2017 -0400 +++ b/align_and_estimate_abundance.xml Tue Sep 26 23:11:20 2017 -0400 @@ -12,7 +12,7 @@ <command> <![CDATA[ - python trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference --output_dir "subdir" + python $__tool_directory__/trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference --output_dir "subdir" ## Inputs. #if str($inputs.paired_or_single) == "paired":