Mercurial > repos > trinity_ctat > align_and_estimate_abundance
changeset 11:2e0e45063fad draft
Trying to fix a syntax error. Seems like the wrong python is being used.
author | trinity_ctat |
---|---|
date | Tue, 26 Sep 2017 22:56:18 -0400 |
parents | a8fa525a2f30 |
children | a130d5b5f34b |
files | align_and_estimate_abundance.xml trinityToolWrapper.py |
diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/align_and_estimate_abundance.xml Tue Sep 26 22:26:13 2017 -0400 +++ b/align_and_estimate_abundance.xml Tue Sep 26 22:56:18 2017 -0400 @@ -10,9 +10,9 @@ <requirement type="package">rsem</requirement> </requirements> - <command interpreter="python"> + <command> <![CDATA[ - trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference --output_dir "subdir" + python trinityToolWrapper.py util/align_and_estimate_abundance.pl --transcripts $transcripts --est_method RSEM --aln_method bowtie --trinity_mode --prep_reference --output_dir "subdir" ## Inputs. #if str($inputs.paired_or_single) == "paired":