Mercurial > repos > tmcgowan > edger

view tool_dependencies.xml @ 0:86fb12932c75 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author tmcgowan
date Tue, 18 Nov 2014 15:33:32 -0500
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="R" version="3.0.2">
        <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="bioc_edger" version="3.8.3">
        <install version="1.0">
            <actions>
                <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/edgeR_3.8.3.tar.gz</action>
                <action type="set_environment_for_install">
                    <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
                        <package name="R" version="3.0.2" />
                    </repository>
                </action>
                <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL edgeR_3.8.3.tar.gz</action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
        </readme>
    </package>
</tool_dependency>