Mercurial > repos > tmcgowan > edger

changeset 0:86fb12932c75 draft default tip

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Uploaded
author tmcgowan
date Tue, 18 Nov 2014 15:33:32 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Nov 18 15:33:32 2014 -0500
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="R" version="3.0.2">
+        <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="bioc_edger" version="3.8.3">
+        <install version="1.0">
+            <actions>
+                <action type="download_file">http://www.bioconductor.org/packages/release/bioc/src/contrib/edgeR_3.8.3.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="b6fe8ca3230d" name="package_r_3_0_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="R" version="3.0.2" />
+                    </repository>
+                </action>
+                <action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL edgeR_3.8.3.tar.gz</action>
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        </readme>
+    </package>
+</tool_dependency>