view points2binaryimage.xml @ 0:74b946cdba21 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2binaryimage/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0

<tool id="points2binaryimage" name="Points to Binary Image" version="0.1"> 
  <description>Converts points to a binary image</description>
  <requirements> 
    <requirement type="package" version="0.14.1" >scikit-image</requirement>
    <requirement type="package" version="1.15.4">numpy</requirement>
    <requirement type="package" version="0.23.4">pandas</requirement>
    <requirement type="package" version="2018.7">pytz</requirement><!--pandas seems to have additional requirements that are not automatically installed-->
    <requirement type="package" version="2.4.1">dateutil</requirement>
  </requirements>
  <command> 
        <![CDATA[
        python '$__tool_directory__/points2binaryimage.py' '$input' '$output' $shapex $shapey $has_header $invert_xy 
        ]]>
  </command>
  <inputs> 
    <param name="input" type="data" format="csv" label="CSV point file"/> 
    <param name="shapex" type="integer" value="500" optional="true" min="1" max="2000" label="Width of output image" />
    <param name="shapey" type="integer" value="500" optional="true" min="1" max="2000" label="Height of output image" />
    <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" /> 
    <param name="invert_xy" type="boolean" checked="false" falsevalue="" truevalue="--invert_xy True" optional="true" label="Inverts x and y in CSV point file" />
  </inputs>
  <outputs>
    <data name="output" format="tiff" />
  </outputs>
  <tests>
    <test>
      <param name="input" value="points.csv" />
      <param name="shapex" value="20" /> 
      <param name="shapey" value="30" />
      <param name="has_header" value="false" />
      <param name="invert_xy" value="true" />
      <output name="output" ftype="tiff" file="out.tiff"  compare="sim_size"/> 
    </test>
  </tests>
  <help>Converts CSV point file to binary image.</help>
  <citations>
      <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> 
  </citations>
</tool>