diff points2binaryimage.xml @ 0:74b946cdba21 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/points2binaryimage/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/points2binaryimage.xml	Wed Dec 12 04:51:33 2018 -0500
@@ -0,0 +1,39 @@
+<tool id="points2binaryimage" name="Points to Binary Image" version="0.1"> 
+  <description>Converts points to a binary image</description>
+  <requirements> 
+    <requirement type="package" version="0.14.1" >scikit-image</requirement>
+    <requirement type="package" version="1.15.4">numpy</requirement>
+    <requirement type="package" version="0.23.4">pandas</requirement>
+    <requirement type="package" version="2018.7">pytz</requirement><!--pandas seems to have additional requirements that are not automatically installed-->
+    <requirement type="package" version="2.4.1">dateutil</requirement>
+  </requirements>
+  <command> 
+        <![CDATA[
+        python '$__tool_directory__/points2binaryimage.py' '$input' '$output' $shapex $shapey $has_header $invert_xy 
+        ]]>
+  </command>
+  <inputs> 
+    <param name="input" type="data" format="csv" label="CSV point file"/> 
+    <param name="shapex" type="integer" value="500" optional="true" min="1" max="2000" label="Width of output image" />
+    <param name="shapey" type="integer" value="500" optional="true" min="1" max="2000" label="Height of output image" />
+    <param name="has_header" type="boolean" checked="false" truevalue="--has_header True" falsevalue="" optional="true" label="Does point file contain header?" /> 
+    <param name="invert_xy" type="boolean" checked="false" falsevalue="" truevalue="--invert_xy True" optional="true" label="Inverts x and y in CSV point file" />
+  </inputs>
+  <outputs>
+    <data name="output" format="tiff" />
+  </outputs>
+  <tests>
+    <test>
+      <param name="input" value="points.csv" />
+      <param name="shapex" value="20" /> 
+      <param name="shapey" value="30" />
+      <param name="has_header" value="false" />
+      <param name="invert_xy" value="true" />
+      <output name="output" ftype="tiff" file="out.tiff"  compare="sim_size"/> 
+    </test>
+  </tests>
+  <help>Converts CSV point file to binary image.</help>
+  <citations>
+      <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> 
+  </citations>
+</tool>