view permutate_axis.xml @ 0:8fb82d514666 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/permutate_axis/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0

<tool id="permutate_axis" name="Permutate Axis" version="0.1">
  <description> Permutates axes </description>
  <requirements>
    <requirement type="package" version="0.14.0">scikit-image</requirement>
    <requirement type="package" version="1.15.4">numpy</requirement>
  </requirements>
  <command>
    <![CDATA[
    python '$__tool_directory__/permutate_axis.py' '$input' '$output' $permutate --axis $axis
    ]]>
  </command>
  <inputs>
    <param name="input" type="data" format="tiff" label="Binary Image File"/>
    <param name="permutate" type="text" value="0,1,2" label="new channel order">
      <validator type="regex" message="Input has to be a sequence of axis, separated by commas">([0-4],)+[0-4]</validator>
    </param>
    <param name="axis" type="integer" value="0" label="concatenation axis" help="Concatenation axis (0-4)" /><!-- why not have a selection from 0 to 4?-->
  </inputs>
  <outputs>
    <data format="tiff" name="output"/>
  </outputs>
  <tests>
    <test>
      <param name="input" value="galaxyIcon_noText.tif"/>
      <output name="output" file="res.tif" ftype="tiff" compare="sim_size"/>
    </test>
  </tests>
  <help>Permutates the image along a specified axis.</help>
  <citations>
      <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> 
  </citations>
</tool>