diff permutate_axis.xml @ 0:8fb82d514666 draft default tip

planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/permutate_axis/ commit 27a6350188f687411bdd6bfe0d569c0803389ca0

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/permutate_axis.xml	Wed Dec 12 04:50:51 2018 -0500
@@ -0,0 +1,32 @@
+<tool id="permutate_axis" name="Permutate Axis" version="0.1">
+  <description> Permutates axes </description>
+  <requirements>
+    <requirement type="package" version="0.14.0">scikit-image</requirement>
+    <requirement type="package" version="1.15.4">numpy</requirement>
+  </requirements>
+  <command>
+    <![CDATA[
+    python '$__tool_directory__/permutate_axis.py' '$input' '$output' $permutate --axis $axis
+    ]]>
+  </command>
+  <inputs>
+    <param name="input" type="data" format="tiff" label="Binary Image File"/>
+    <param name="permutate" type="text" value="0,1,2" label="new channel order">
+      <validator type="regex" message="Input has to be a sequence of axis, separated by commas">([0-4],)+[0-4]</validator>
+    </param>
+    <param name="axis" type="integer" value="0" label="concatenation axis" help="Concatenation axis (0-4)" /><!-- why not have a selection from 0 to 4?-->
+  </inputs>
+  <outputs>
+    <data format="tiff" name="output"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="input" value="galaxyIcon_noText.tif"/>
+      <output name="output" file="res.tif" ftype="tiff" compare="sim_size"/>
+    </test>
+  </tests>
+  <help>Permutates the image along a specified axis.</help>
+  <citations>
+      <citation type="doi">10.1016/j.jbiotec.2017.07.019</citation> 
+  </citations>
+</tool>
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