Mercurial > repos > tduigou > parameters_maystro_workflow_1

annotate test-data/test-JSON_workflow1.json @ 1:8bc9c1fb79f1 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
author tduigou
date Thu, 31 Jul 2025 08:58:07 +0000
parents be08b189b32d
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
1 {
1
8bc9c1fb79f1 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
tduigou
parents: 0
diff changeset
2 "avoid_patterns": "BsaI_site\nBsmBI_site\nBbsI_site\nSapI_site\n8x1mer\n5x3mer\n9x2mer",
8bc9c1fb79f1 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
tduigou
parents: 0
diff changeset
3 "hairpin_constraints": "stem_size=20, hairpin_window=200",
8bc9c1fb79f1 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
tduigou
parents: 0
diff changeset
4 "gc_constraints": "mini=0.1, maxi=0.9,, window=100\nmini=0.3, maxi=0.7, window=100",
8bc9c1fb79f1 planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 98d5e65b8008dbca117b2e0655cfdd54655fac48-dirty
tduigou
parents: 0
diff changeset
5 "kmer_size": "15",
0
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
6 "execution": "true",
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
7 "db_uri": "postgresql://postgres:RK17@localhost:5432/test_fragments_db",
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
8 "table": "sample",
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
9 "fragment_column": "fragment",
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
10 "sequence_column": "sequence",
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
11 "annotation_column": "annotation",
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
12 "assembly_plan_name": "Type2sRestrictionAssembly",
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
13 "topology": "circular",
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
14 "enzyme": "auto"
be08b189b32d planemo upload for repository https://github.com/brsynth/galaxytools/tree/main/tools/parameters_maystro commit 2dc993db453f1091c041ee6ceb41c5e02561adf3-dirty
tduigou
parents:
diff changeset
15 }