Mercurial > repos > stephenshank > hyphy_gard

annotate macros.xml @ 1:0ea9da9cd6ad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
author stephenshank
date Tue, 30 Oct 2018 10:56:18 -0400
parents 81b2d9fd1284
children 0caaff912a55
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81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
diff changeset
1 <?xml version="1.0"?>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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2 <macros>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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3 <xml name="citations">
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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4 <citations>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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5 <citation type="doi">10.1093/bioinformatics/bti079</citation>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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6 <yield />
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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7 </citations>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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8 </xml>
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0ea9da9cd6ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
stephenshank
parents: 0
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9 <token name="@VERSION@">2.3.14</token>
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81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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10 <xml name="requirements">
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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11 <requirements>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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12 <requirement type="package" version="@VERSION@">hyphy</requirement>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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13 <yield />
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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14 </requirements>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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15 </xml>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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16 <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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17 export HYPHY_PATH=`dirname \$HYPHY` &&
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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18 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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19 cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]>
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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20 </token>
1
0ea9da9cd6ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
stephenshank
parents: 0
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21 <token name="@HYPHYMPI_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
0ea9da9cd6ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
stephenshank
parents: 0
diff changeset
22 export HYPHY_PATH=`dirname \$HYPHY` &&
0ea9da9cd6ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
stephenshank
parents: 0
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23 export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
0ea9da9cd6ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
stephenshank
parents: 0
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24 cat tool_params | mpirun -np \${GALAXY_SLOTS:-1} HYPHYMPI LIBPATH=\$HYPHY_LIB ]]>
0ea9da9cd6ad planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 6da8a2296bb256e47852690cf2221a7c943d8adc-dirty
stephenshank
parents: 0
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25 </token>
0
81b2d9fd1284 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
stephenshank
parents:
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26 </macros>