Mercurial > repos > stephenshank > hyphy_gard

diff macros.xml @ 0:81b2d9fd1284 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit f6438e952ee0a778ceae15f294bd80eb5460455f-dirty
author stephenshank
date Wed, 12 Sep 2018 16:07:49 -0400
parents
children 0ea9da9cd6ad
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Wed Sep 12 16:07:49 2018 -0400
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<macros>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1093/bioinformatics/bti079</citation>
+            <yield />
+        </citations>
+    </xml>
+    <token name="@VERSION@">2.3.12</token>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="@VERSION@">hyphy</requirement>
+            <yield />
+        </requirements>
+    </xml>
+    <token name="@HYPHY_INVOCATION@"><![CDATA[export HYPHY=`which HYPHYMP` &&
+export HYPHY_PATH=`dirname \$HYPHY` &&
+export HYPHY_LIB=`readlink -f \$HYPHY_PATH/../lib/hyphy` &&
+cat tool_params | HYPHYMP LIBPATH=\$HYPHY_LIB ]]>
+    </token>
+</macros>
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