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1 <tool id="R_test" name="R_test" version="1" force_history_refresh="True">
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2
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3 <requirements>
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4 <requirement type="package" version="3.1.0">R</requirement>
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5 </requirements>
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6
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7 <description>Package to test R package install</description>
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8
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9 <command interpreter="Rscript">
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10 R_test.R $config
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11 </command>
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12
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13 <stdio>
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14 <exit_code range="1:" level="fatal" description="R script didnt finish correctly, check log" />
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15 </stdio>
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16
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17 <inputs>
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18
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19 <param name="jobName" type="text" optional="false" label="Analysis/ouput name" help="Supply a name for the outputs to remind you what they contain" value="TEST">
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20 <validator type="empty_field" />
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21 <validator type="regex" message="This field should contain some non-whitespace character">.*\S</validator>
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22 </param>
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23
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24 </inputs>
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1
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25
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26 <configfiles>
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27 <configfile name="config">
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28 "${jobName}" -> outputName
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29 "${htmlFile}" -> htmlFile
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30 "${pngFile}" -> pngFile
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31 </configfile>
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32 </configfiles>
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33
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34 <outputs>
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35 <data format="html" name="htmlFile" label="rTestHTML: ${jobName}" />
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36 <data format="png" name="pngFile" label="rTestPNG: ${jobName}" />
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37
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38 </outputs>
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39
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40 <help>
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41 .. class:: infomark
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42
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43 **Introduction**
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44
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45 This is just a tiny package to test R dependecies
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46 </help>
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47
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48 </tool>
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