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1 <tool id="R_test" name="R_test" version="1" force_history_refresh="True">
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2
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3 <requirements>
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4 <requirement type="package" version="3.1.0">R</requirement>
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5 </requirements>
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6
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7 <description>Package to test R package install</description>
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8
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9 <command interpreter="Rscript">
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10 R_test.R
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11 </command>
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12
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13 <stdio>
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14 <!-- Anything higher than 0 means the R script didnt finish (correctly) -->
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15 <!-- Because different R packages deal with err/warn differently unable to waterproof this -->
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16 <exit_code range="1:" level="fatal" description="R script didnt finish correctly, check log" />
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17 </stdio>
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18
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19 <inputs>
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20
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21 <!-- Job name: must contain non-whitespace chars -->
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22 <param name="jobName" type="text" optional="false" label="Analysis/ouput name" help="Supply a name for the outputs to remind you what they contain" value="TEST">
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23 <validator type="empty_field" />
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24 <validator type="regex" message="This field should contain some non-whitespace character">.*\S</validator>
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25 </param>
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26
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27 </inputs>
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28
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29 <outputs>
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30
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31 <!-- main output is a html report -->
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32 <!-- ...but there can be more outputs using the id of the htmlFile output -->
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33 <data format="html" name="htmlFile" label="rTest: ${jobName}" />
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34
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35 </outputs>
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36
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37 <help>
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38 .. class:: infomark
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39
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40 **Introduction**
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41
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42 This is just a tiny package to test R install
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43 </help>
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44
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45 </tool>
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