Mercurial > repos > stef > qdnaseq_test
changeset 4:4f5fd8b917eb draft
Uploaded
| author | stef |
|---|---|
| date | Mon, 06 Oct 2014 05:33:48 -0400 |
| parents | 41387ffa145f |
| children | 440c8d5e416d |
| files | QDNAseq.xml tool_dependencies.xml |
| diffstat | 2 files changed, 4 insertions(+), 6 deletions(-) [+] |
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--- a/QDNAseq.xml Fri Sep 05 11:06:01 2014 -0400 +++ b/QDNAseq.xml Mon Oct 06 05:33:48 2014 -0400 @@ -3,7 +3,7 @@ <requirements> <!-- R 3.1.0 dependency will be used instead when available, now default R is used, see command --> - <!-- <requirement type="package" version="3.1.0">R</requirement> --> + <requirement type="package" version="3.1.0">R</requirement> <!-- <requirement type="package" version="1.0.5">qdnaseq</requirement> --> <requirement type="package" version="0.1.18">samtools</requirement> </requirements>
--- a/tool_dependencies.xml Fri Sep 05 11:06:01 2014 -0400 +++ b/tool_dependencies.xml Mon Oct 06 05:33:48 2014 -0400 @@ -2,18 +2,16 @@ <tool_dependency> <package name="samtools" version="0.1.18"> - <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" /> + <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> <!-- As soon as R 3_1_0 package works good, all dependencies will be set via "package_qdnaseq_1_0_5" --> <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" --> - <!-- <package name="R" version="3.1.0"> - <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" /> + <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - --> - + <!-- <package name="qdnaseq" version="1.0.5"> <repository name="package_qdnaseq_1_0_5" owner="stef"/>