# HG changeset patch
# User stef
# Date 1412588028 14400
# Node ID 4f5fd8b917eb062871a7a3aa45f4dab1031c786f
# Parent  41387ffa145f160d12c4be1ed484d1f8b23b2f79
Uploaded

diff -r 41387ffa145f -r 4f5fd8b917eb QDNAseq.xml
--- a/QDNAseq.xml	Fri Sep 05 11:06:01 2014 -0400
+++ b/QDNAseq.xml	Mon Oct 06 05:33:48 2014 -0400
@@ -3,7 +3,7 @@
   <requirements>
     
     <!-- R 3.1.0 dependency will be used instead when available, now default R is used, see command -->
-    <!-- <requirement type="package" version="3.1.0">R</requirement> -->
+    <requirement type="package" version="3.1.0">R</requirement>
     <!-- <requirement type="package" version="1.0.5">qdnaseq</requirement> -->
     <requirement type="package" version="0.1.18">samtools</requirement>
   </requirements>
diff -r 41387ffa145f -r 4f5fd8b917eb tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Sep 05 11:06:01 2014 -0400
+++ b/tool_dependencies.xml	Mon Oct 06 05:33:48 2014 -0400
@@ -2,18 +2,16 @@
 <tool_dependency>
     
     <package name="samtools" version="0.1.18">
-        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
+        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 
     <!-- As soon as R 3_1_0 package works good, all dependencies will be set via "package_qdnaseq_1_0_5" -->
     <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" -->
     
-    <!--
     <package name="R" version="3.1.0">
-        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
+        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    -->
-
+    
     <!--
     <package name="qdnaseq" version="1.0.5">
         <repository name="package_qdnaseq_1_0_5" owner="stef"/>