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6
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3
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4 <package name="samtools" version="0.1.18">
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9
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5 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
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6
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6 </package>
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7
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8 <!-- As soon as R 3_1_0 package works good, all dependencies will be set via "package_qdnaseq_1_0_5" -->
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9 <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" -->
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10
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9
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11 <!--
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6
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12 <package name="R" version="3.1.0">
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9
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13 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
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6
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14 </package>
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9
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15 -->
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6
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16
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17 <!--
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9
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18 <package name="qdnaseq" version="1.0.5">
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19 <repository name="package_qdnaseq_1_0_5" owner="stef"/>
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20 </package>
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21 -->
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22
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23
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6
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24 <action type="set_environment">
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9
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25 <environment_variable name="INSTALL_DIR" action="prepend_to">$INSTALL_DIR</environment_variable>
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6
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26 </action>
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9
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27
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6
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28
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29 </tool_dependency>
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