diff tool_dependencies.xml @ 9:4efd258b33d9 draft

Uploaded

--- a/tool_dependencies.xml	Mon Oct 27 05:38:16 2014 -0400
+++ b/tool_dependencies.xml	Fri Oct 31 07:13:53 2014 -0400
@@ -2,24 +2,28 @@
 <tool_dependency>
     
     <package name="samtools" version="0.1.18">
-        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
     </package>
 
     <!-- As soon as R 3_1_0 package works good, all dependencies will be set via "package_qdnaseq_1_0_5" -->
     <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" -->
     
+    <!--
     <package name="R" version="3.1.0">
-        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
     </package>
-    
-    <package name="qdnaseq" version="1.0.5">
-        <repository changeset_revision="8473e3b3c386" name="package_qdnaseq_1_0_5" owner="stef" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
+    -->
 
     <!--
+    <package name="qdnaseq" version="1.0.5">
+        <repository name="package_qdnaseq_1_0_5" owner="stef"/>
+    </package>
+    -->
+
+    
     <action type="set_environment">
-        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+        <environment_variable name="INSTALL_DIR" action="prepend_to">$INSTALL_DIR</environment_variable>
     </action>
-    -->
+    
     
 </tool_dependency>