|
0
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3
|
|
|
4 <package name="samtools" version="0.1.18">
|
|
|
5 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
|
|
|
6 </package>
|
|
|
7
|
|
|
8 <!-- As soon as R 3_1_0 package works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
|
|
|
9 <!-- Now this depency has to be manually installed by installing Bioconductor package "QDNAseq" -->
|
|
|
10
|
|
|
11 <package name="R" version="3.1.0">
|
|
|
12 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
|
|
|
13 </package>
|
|
|
14
|
|
|
15 <!--
|
|
|
16 <package name="qdnaseq" version="1.0.5">
|
|
|
17 <repository name="package_qdnaseq_1_0_5" owner="stef"/>
|
|
|
18 </package>
|
|
|
19 -->
|
|
|
20
|
|
|
21 <!-- environment variable not in use now -->
|
|
|
22 <!--
|
|
|
23 <action type="set_environment">
|
|
|
24 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
|
|
|
25 </action>
|
|
|
26 -->
|
|
|
27
|
|
|
28 </tool_dependency>
|
