view tool_dependencies.xml @ 1:034fedc6043f draft

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<?xml version="1.0"?>
<tool_dependency>
    
    <package name="samtools" version="0.1.18">
        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
    </package>

    <!-- As soon as R 3_1_0 package works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
    <!-- Now this depency has to be manually installed by installing Bioconductor package "QDNAseq" -->
    
    <package name="R" version="3.1.0">
        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
    </package>
    
    <!--
    <package name="qdnaseq" version="1.0.5">
        <repository name="package_qdnaseq_1_0_5" owner="stef"/>
    </package>
    -->

    <!-- environment variable not in use now -->
    <!--
    <action type="set_environment">
        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
    </action>
    -->
    
</tool_dependency>