diff tool_dependencies.xml @ 0:cc5254dac2b6 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Aug 27 04:59:55 2014 -0400
@@ -0,0 +1,28 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    
+    <package name="samtools" version="0.1.18">
+        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
+    </package>
+
+    <!-- As soon as R 3_1_0 package works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
+    <!-- Now this depency has to be manually installed by installing Bioconductor package "QDNAseq" -->
+    
+    <package name="R" version="3.1.0">
+        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
+    </package>
+    
+    <!--
+    <package name="qdnaseq" version="1.0.5">
+        <repository name="package_qdnaseq_1_0_5" owner="stef"/>
+    </package>
+    -->
+
+    <!-- environment variable not in use now -->
+    <!--
+    <action type="set_environment">
+        <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
+    </action>
+    -->
+    
+</tool_dependency>