Mercurial > repos > stef > qdnaseq
changeset 11:821fb6bdbbeb draft
Uploaded
author | stef |
---|---|
date | Mon, 16 Jun 2014 08:11:03 -0400 |
parents | b408285701b1 |
children | 7318921f937c |
files | tool_dependencies.xml |
diffstat | 1 files changed, 1 insertions(+), 1 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Jun 16 07:56:15 2014 -0400 +++ b/tool_dependencies.xml Mon Jun 16 08:11:03 2014 -0400 @@ -15,12 +15,12 @@ <!--<action type="download_by_url"> http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz </action>--> - <action type="shell_command">wget http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</action> <action type="set_environment_for_install"> <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/"> <package name="R" version="3.0.3" /> </repository> </action> + <action type="shell_command">wget http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</action> <action type="shell_command">ls -l && echo "print dir" && pwd</action> <action type="shell_command">export R_LIBS=$INSTALL_DIR && R CMD INSTALL QDNAseq_1.0.5.tar.gz</action> <!--<action type="shell_command">R CMD INSTALL QDNAseq_1.0.5.tar.gz</action>-->