# HG changeset patch
# User stef
# Date 1402920663 14400
# Node ID 821fb6bdbbeb4a00c58fe3d430ef920345ae3707
# Parent  b408285701b10749219e2a9e91687841b65c5b8c
Uploaded

diff -r b408285701b1 -r 821fb6bdbbeb tool_dependencies.xml
--- a/tool_dependencies.xml	Mon Jun 16 07:56:15 2014 -0400
+++ b/tool_dependencies.xml	Mon Jun 16 08:11:03 2014 -0400
@@ -15,12 +15,12 @@
 				<!--<action type="download_by_url">
 					http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz
 				</action>-->
-				<action type="shell_command">wget http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</action>
 				<action type="set_environment_for_install">
 					<repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/">
 						<package name="R" version="3.0.3" />
 					</repository>
 				</action>
+				<action type="shell_command">wget http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.5.tar.gz</action>
 				<action type="shell_command">ls -l &amp;&amp; echo "print dir" &amp;&amp; pwd</action>
 				<action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL QDNAseq_1.0.5.tar.gz</action>
 				<!--<action type="shell_command">R CMD INSTALL QDNAseq_1.0.5.tar.gz</action>-->