Mercurial > repos > stef > qdnaseq
changeset 27:47c3ecce5544 draft
Uploaded
| author | stef |
|---|---|
| date | Wed, 18 Jun 2014 05:29:50 -0400 |
| parents | 2efda0ed7ccf |
| children | 40ae95ad9d8c |
| files | QDNAseq.xml |
| diffstat | 1 files changed, 5 insertions(+), 11 deletions(-) [+] |
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--- a/QDNAseq.xml Wed Jun 18 05:09:43 2014 -0400 +++ b/QDNAseq.xml Wed Jun 18 05:29:50 2014 -0400 @@ -279,21 +279,15 @@ .. class:: warningmark +As there is no R 3.1.0 package yet which is required, the **dependencies** need to be installed by hand and available to the galaxy user: R (3.1.0) and bioconductor package QDNAseq (>= 1.0.5) + +.. class:: warningmark + The input BAMs are expected to be **single end reads of 50bp length** mapped to GRCh37/hg19 genome build. Other experiment setups are currently not supported within galaxy. See the documentation of QDNAseq at bioconductor on how to deal with different setups. .. class:: warningmark -Requires **internet access** for downloading bin-annotations from bitbucket and to show css styling of the final report - -.. class:: warningmark - -If the data is noisy, a **larger binsize** should be chosen - ------ - -**Example** - -To be done +Requires **internet access** for downloading bin-annotations from bitbucket and to show some styling (css) of the final report -----