# HG changeset patch
# User stef
# Date 1403083790 14400
# Node ID 47c3ecce55440aa6d4ac5e2381b1f92ff65bb500
# Parent  2efda0ed7ccf07503cb89ddff53b6de6576d6721
Uploaded

diff -r 2efda0ed7ccf -r 47c3ecce5544 QDNAseq.xml
--- a/QDNAseq.xml	Wed Jun 18 05:09:43 2014 -0400
+++ b/QDNAseq.xml	Wed Jun 18 05:29:50 2014 -0400
@@ -279,21 +279,15 @@
 
 .. class:: warningmark
 
+As there is no R 3.1.0 package yet which is required, the **dependencies** need to be installed by hand and available to the galaxy user: R (3.1.0) and bioconductor package QDNAseq (>= 1.0.5)
+
+.. class:: warningmark
+
 The input BAMs are expected to be **single end reads of 50bp length** mapped to GRCh37/hg19 genome build. Other experiment setups are currently not supported within galaxy. See the documentation of QDNAseq at bioconductor on how to deal with different setups.
 
 .. class:: warningmark
 
-Requires **internet access** for downloading bin-annotations from bitbucket and to show css styling of the final report
-
-.. class:: warningmark
-
-If the data is noisy, a **larger binsize** should be chosen
-
------
-
-**Example**
-
-To be done
+Requires **internet access** for downloading bin-annotations from bitbucket and to show some styling (css) of the final report
 
 -----