Mercurial > repos > stef > qdnaseq
changeset 7:2671b48cc122 draft
Deleted selected files
| author | stef |
|---|---|
| date | Mon, 16 Jun 2014 04:55:44 -0400 |
| parents | beb7abe277b3 |
| children | b430d4b84233 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 0 insertions(+), 36 deletions(-) [+] |
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--- a/tool_dependencies.xml Fri Jun 13 11:01:25 2014 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,36 +0,0 @@ -<?xml version="1.0"?> -<tool_dependency> - - <set_environment version="1.0"> - <environment_variable name="QDNASEQ_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable> - </set_environment> - - <package name="R" version="3.0.3"> - <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/" /> - </package> - - <package name="bioc_qdnaseq" version="1.0.4"> - <install version="1.0"> - <actions> - <action type="download_by_url"> - http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.4.tar.gz - </action> - <action type="set_environment_for_install"> - <repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/"> - <package name="R" version="3.0.3" /> - </repository> - </action> - <action type="shell_command">export R_LIBS=$INSTALL_DIR && R CMD INSTALL QDNAseq_1.0.4.tar.gz</action> - - <action type="set_environment"> - <environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable> - </action> - </actions> - </install> - - <readme> - Should install QDNAseq package from bioconductor. - </readme> - </package> - -</tool_dependency>