# HG changeset patch
# User stef
# Date 1402908944 14400
# Node ID 2671b48cc122b9150e768549f55817e5b3450768
# Parent  beb7abe277b3555bbe312c713d1c0a2468dcd9a6
Deleted selected files

diff -r beb7abe277b3 -r 2671b48cc122 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Jun 13 11:01:25 2014 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,36 +0,0 @@
-<?xml version="1.0"?>
-<tool_dependency>
-	
-	<set_environment version="1.0">
-     	<environment_variable name="QDNASEQ_SCRIPT_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
-     </set_environment>
-
-	<package name="R" version="3.0.3">
-		<repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/" />
-	</package>
-	
-	<package name="bioc_qdnaseq" version="1.0.4">
-		<install version="1.0">
-			<actions>
-				<action type="download_by_url">
-					http://bioconductor.org/packages/release/bioc/src/contrib/QDNAseq_1.0.4.tar.gz
-				</action>
-				<action type="set_environment_for_install">
-					<repository changeset_revision="232ebc8b1c0d" name="package_r_3_0_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu/">
-						<package name="R" version="3.0.3" />
-					</repository>
-				</action>
-				<action type="shell_command">export R_LIBS=$INSTALL_DIR &amp;&amp; R CMD INSTALL QDNAseq_1.0.4.tar.gz</action>
-				
-				<action type="set_environment">
-						<environment_variable action="prepend_to" name="R_LIBS">$INSTALL_DIR/bin</environment_variable>
-				</action>
-			</actions>
-		</install>
-		
-		<readme>
-			Should install QDNAseq package from bioconductor.
-		</readme>
-	</package>
-		
-</tool_dependency>