Mercurial > repos > stef > qdnaseq
diff tool_dependencies.xml @ 72:fb2dfd8ba417 draft
Uploaded
author | stef |
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date | Fri, 05 Sep 2014 11:10:27 -0400 |
parents | c22cb12128cf |
children | 0feb7fa37245 |
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--- a/tool_dependencies.xml Wed Aug 27 04:56:37 2014 -0400 +++ b/tool_dependencies.xml Fri Sep 05 11:10:27 2014 -0400 @@ -5,19 +5,21 @@ <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" /> </package> - <!-- As soon as R 3_1_0 package works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" --> - <!-- Now this depency has to be manually installed by installing Bioconductor package "QDNAseq" --> + <!-- As soon as R 3_1_0 package works good, all dependencies will be set via "package_qdnaseq_1_0_5" --> + <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" --> + <!-- <package name="R" version="3.1.0"> <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" /> </package> - + --> + + <!-- <package name="qdnaseq" version="1.0.5"> <repository name="package_qdnaseq_1_0_5" owner="stef"/> </package> --> - <!-- environment variable not in use now --> <!-- <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>