diff tool_dependencies.xml @ 72:fb2dfd8ba417 draft

Uploaded

--- a/tool_dependencies.xml	Wed Aug 27 04:56:37 2014 -0400
+++ b/tool_dependencies.xml	Fri Sep 05 11:10:27 2014 -0400
@@ -5,19 +5,21 @@
         <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
     </package>
 
-    <!-- As soon as R 3_1_0 package works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" -->
-    <!-- Now this depency has to be manually installed by installing Bioconductor package "QDNAseq" -->
+    <!-- As soon as R 3_1_0 package works good, all dependencies will be set via "package_qdnaseq_1_0_5" -->
+    <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" -->
+    
     <!--
     <package name="R" version="3.1.0">
         <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" />
     </package>
-    
+    -->
+
+    <!--
     <package name="qdnaseq" version="1.0.5">
         <repository name="package_qdnaseq_1_0_5" owner="stef"/>
     </package>
     -->
 
-    <!-- environment variable not in use now -->
     <!--
     <action type="set_environment">
         <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>