view tool_dependencies.xml @ 74:0feb7fa37245 draft

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<?xml version="1.0"?>
<tool_dependency>
    
    <package name="samtools" version="0.1.18">
        <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" prior_installation_required="TRUE" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>

    <!-- As soon as R 3_1_0 package works with all packages, all dependencies will be set via "package_qdnaseq_1_0_5" -->
    <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" -->
    
    <!--
    <package name="R" version="3.1.0">
        <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" prior_installation_required="TRUE" />
    </package>
    -->

    <!--
    <package name="qdnaseq" version="1.0.5">
        <repository name="package_qdnaseq_1_0_5" owner="stef" prior_installation_required="TRUE"/>
    </package>
    -->
    
    <set_environment version="1.0">
        <environment_variable action="set_to" name="QDNASEQ_PATH">$REPOSITORY_INSTALL_DIR</environment_variable>
    </set_environment>
    
    
</tool_dependency>