Mercurial > repos > stef > qdnaseq
comparison tool_dependencies.xml @ 72:fb2dfd8ba417 draft
Uploaded
| author | stef |
|---|---|
| date | Fri, 05 Sep 2014 11:10:27 -0400 |
| parents | c22cb12128cf |
| children | 0feb7fa37245 |
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| 71:a93649056969 | 72:fb2dfd8ba417 |
|---|---|
| 3 | 3 |
| 4 <package name="samtools" version="0.1.18"> | 4 <package name="samtools" version="0.1.18"> |
| 5 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" /> | 5 <repository changeset_revision="c0f72bdba484" name="package_samtools_0_1_18" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" /> |
| 6 </package> | 6 </package> |
| 7 | 7 |
| 8 <!-- As soon as R 3_1_0 package works, all QDNAseq dependencies will be set via "package_qdnaseq_1_0_5" --> | 8 <!-- As soon as R 3_1_0 package works good, all dependencies will be set via "package_qdnaseq_1_0_5" --> |
| 9 <!-- Now this depency has to be manually installed by installing Bioconductor package "QDNAseq" --> | 9 <!-- Currently these have to be manually installed by installing Bioconductor package "QDNAseq" --> |
| 10 | |
| 10 <!-- | 11 <!-- |
| 11 <package name="R" version="3.1.0"> | 12 <package name="R" version="3.1.0"> |
| 12 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" /> | 13 <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" prior_installation_required="TRUE" /> |
| 13 </package> | 14 </package> |
| 14 | 15 --> |
| 16 | |
| 17 <!-- | |
| 15 <package name="qdnaseq" version="1.0.5"> | 18 <package name="qdnaseq" version="1.0.5"> |
| 16 <repository name="package_qdnaseq_1_0_5" owner="stef"/> | 19 <repository name="package_qdnaseq_1_0_5" owner="stef"/> |
| 17 </package> | 20 </package> |
| 18 --> | 21 --> |
| 19 | 22 |
| 20 <!-- environment variable not in use now --> | |
| 21 <!-- | 23 <!-- |
| 22 <action type="set_environment"> | 24 <action type="set_environment"> |
| 23 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 25 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 24 </action> | 26 </action> |
| 25 --> | 27 --> |