Mercurial > repos > stef > package_qdnaseq_1_0_5
changeset 0:ce31fec9c3d5 draft
Uploaded
| author | stef |
|---|---|
| date | Thu, 19 Jun 2014 06:00:14 -0400 |
| parents | |
| children | 3fcdbbc43d62 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 49 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Jun 19 06:00:14 2014 -0400 @@ -0,0 +1,49 @@ +<?xml version="1.0"?> +<tool_dependency> + <!-- + <package name="R" version="3.1.0"> + <repository name="package_r_3_1_0" owner="" prior_installation_required="True" /> + </package> + <package name="qdnaseq" version="1.0.5"> + <install version="1.0"> + <actions> + <action type="shell_command">echo "[DEBUG] ..."</action> + <action type="setup_r_environment"> + + <repository name="package_r_3_1_0" owner=""> + <package name="R" version="3.1.0" /> + </repository> + + <package>http://path/to/R.methodsS3_1.6.1.tar.gz</package> + <package>http://path/to/matrixStats_0.10.0.tar.gz</package> + <package>http://path/to/R.oo_1.18.0.tar.gz</package> + <package>http://path/to/R.utils_1.32.4.tar.gz</package> + <package>http://path/to/BiocGenerics_0.10.0.tar.gz</package> + <package>http://path/to/Biobase_2.24.0.tar.gz</package> + <package>http://path/to/limma_3.20.5.tar.gz</package> + <package>http://path/to/marray_1.42.0.tar.gz</package> + <package>http://path/to/CGHbase_1.24.0.tar.gz</package> + <package>http://path/to/impute_1.38.1.tar.gz</package> + <package>http://path/to/DNAcopy_1.38.1.tar.gz</package> + <package>http://path/to/snow_0.3-13.tar.gz</package> + <package>http://path/to/snowfall_1.84-6.tar.gz</package> + <package>http://path/to/CGHcall_2.26.0.tar.gz</package> + <package>http://path/to/IRanges_1.22.9.tar.gz</package> + <package>http://path/to/GenomeInfoDb_1.0.2.tar.gz</package> + <package>http://path/to/XVector_0.4.0.tar.gz</package> + <package>http://path/to/GenomicRanges_1.16.3.tar.gz</package> + <package>http://path/to/zlibbioc_1.10.0.tar.gz</package> + <package>http://path/to/Biostrings_2.32.0.tar.gz</package> + <package>http://path/to/bitops_1.0-6.tar.gz</package> + <package>http://path/to/Rsamtools_1.16.1.tar.gz</package> + <package>http://path/to/QDNAseq_1.0.5.tar.gz</package> + + </action> + </actions> + </install> + <readme> + Prepares R Bioconductor package "QDNAseq" and all of its dependencies. + </readme> + </package> + --> +</tool_dependency>