Mercurial > repos > stef > falco
changeset 44:c8b7098539a7 draft
Uploaded
| author | stef |
|---|---|
| date | Mon, 29 Dec 2014 09:01:35 -0500 |
| parents | 23f597e18b16 |
| children | 150c2182f77e |
| files | README.rst |
| diffstat | 1 files changed, 0 insertions(+), 33 deletions(-) [+] |
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--- a/README.rst Mon Dec 29 07:16:04 2014 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,33 +0,0 @@ -FALCO Amplicon Analysis Pipeline & Galaxy wrapper -======================================== - -FALCO variant-caller is part of the Amplicon Analysis Pipeline (AAP). - -The typical workflow is as follows: -* paired-end amplicon sequencing -* merge pairs by overlapping them -* map the single read fastq with BWA -* perform variant calling with FALCO -* create (html) report of the results - -FALCO uses samtools and straight-forward statistics to determine wether a -potential variant is likely a (technical) artifact or not. - -Input / Output - -Input of the caller is a BAM file, output VCF - - -History - -============== ================================================================ -Date Changes --------------- ---------------------------------------------------------------- -December 2014 * first release in Test Tool Shed -============== ================================================================ - - -Bug Reports & other questions -============================= - -Issues can be reported via http://www.tgac.nl/